Morphology and phylogeny of Diderma aurantiacum (Myxomycetes) — a new species for Russia from the Far East


V. I. Gmoshinskiy, Yu. K. Novozhilov, I. S. Prikhodko, F. M. Bortnikov, O. N. Shchepin, M. Schnittler


DOI: https://doi.org/10.31111/nsnr/2023.57.1.27


Abstract

Two specimens of a rare species Diderma aurantiacum collected in the Sikhote-Alin Nature Reserve and the territory of the Land of the Leopard National Park (Primorye Territory, Russian Fede­ration) were found during revision of the myxomycete collection of the Mycological herbarium of the Komarov Botanical Institute (LE). These specimens are the first records of this species outside the Japanese islands. Diderma aurantiacum is characterized by a thick cartilaginous peridium of dull orange color that breaks into petal-like fragments during dehiscence, a small hemispherical columella, weakly branched dark capillitial threads with pale tips, and warted spores with darker warts arranged in small groups. The color photographs of sporocarp structures and SEM ima­ges of spores and capillitium are published for the first time. The partial nucleotide sequences of nrSSU (18S rDNA) and EF1α genes of specimens from the Russian Far East differed clearly from these of other Diderma species.


Keywords: Amoebozoa, Didymiaceae, Leangium, Physarales, illustrations, slime molds, phylo­geny, Far East, Primorye Territory, Russia


Section: Fungi


How to cite

Gmoshinskiy V. I., Novozhilov Yu. K., Prikhodko I. S., Bortnikov F. M., Shchepin O. N., Schnittler M. 2023. Morphology and phylogeny of Diderma aurantiacum (Myxomycetes) — a new species for Russia from the Far East. Novosti sistematiki nizshikh rastenii 57(1): 27–42. https://doi.org/10.31111/nsnr/2023.57.1.27


Received: 31 January 2023. Accepted: 10 March 2023. Published: 2 April 2023


References

Adamonyte G., Stephenson S. L., Michaud A., Seraoui E.-H., Meyer M., Novozhilov Y. K., Krivomaz T. 2011. Myxomycete species diversity on the island of La Réunion (Indian Ocean). Nova Hedwigia 92: 523–549. https://doi.org/10.1127/0029-5035/2011/0092-0523

Emoto Y. 1977. The Myxomycetes of Japan. Tokyo: 263 p.

Farr M. L. 1971. Two undescribed Myxomycetes from Argentina. Mycologia 63 (3): 634–639. https://doi.org/10.1016/j.ympev.2007.12.011

Fiore-Donno A. M., Meyer M., Baldauf S. L., Pawlowski J. 2008. Evolution of dark-spored Myxomycetes (slime-molds): molecules versus morphology. Molecular Phylogenetics and Evolution 46: 878–889. https://doi.org/10.1111/j.1550-7408.2005.00032.x

Fiore-Donno A. M., Nikolaev S. I., Nelson M., Pawlowski J., Cavalier-Smith T., Baldauf S. L. 2010. Deep phylogeny and evolution of slime moulds (Mycetozoa). Protist 161: 55–70. https://doi.org/10.1016/j.protis.2009.05.002

Fiore-Donno A. M., Novozhilov Y. K., Meyer M., Schnittler M. 2011. Genetic structure of two protist species (Myxogastria, Amoebozoa) suggests asexual reproduction in sexual amoebae. PLoS ONE 6(8): e22872. https://doi.org/10.1371/journal.pone.0022872

Fiore-Donno A. M., Tice A. K., Brown M. W. 2019. A non-flagellated member of the Myxogastria and expansion of the Echinosteliida. Journal of Eukaryotic Microbiology 66: 538–544. https://doi.org/10.1111/jeu.12694

Geo A., Rex M. D. 1893. New North American Myxomycetes. Proceedings of the Academy of Natural Sciences of Philadelphia 45(2): 364–372.

Harakon Y., Li Y., Ooga S. 2005. Myxomycetes of the Kyushu University Forests. Bulletin of the Kyushu University Forests 86: 33–54. https://doi.org/10.15017/14855

Hoang D. T., Chernomor O., von Haeseler A., Minh B. Q., Vinh L. S. 2018. UFBoot2: Improving the Ultrafast Bootstrap Approximation. Molecular Biology and Evolution 35(2): 518–522. https://doi.org/10.1093/molbev/msx281

Huelsenbeck J. P., Ronquist F. 2001. MrBayes: Bayesian inference of phylogeny. Bioinformatics 17: 754–755. https://doi.org/10.1093/bioinformatics/17.8.754

Ing B. 1999. The myxomycetes of Britain and Ireland. London: 374 p.

Kalyaanamoorthy S., Minh B. Q., Wong T. K. F., von Haeseler A., Jermiin L. S. 2017. ModelFinder: fast model selection for accurate phylogenetic estimates. Nature Methods 14: 587–589. https://doi.org/10.1038/nmeth.4285

Katoh K., Standley D. M. 2013. MAFFT multiple sequence alignment software version 7: improvements in performance and usability. Molecular Biology and Evolution 30: 772–780. https://doi.org/10.1093/molbev/mst010

Katoh K., Rozewicki J., Yamada K. D. 2019. MAFFT online service: multiple sequence alignment, interactive sequence choice and visualization. Briefings in Bioinformatics 20(4): 1160–1166. https://doi.org/10.1093/bib/bbx108

Lado C. 2005–2023. An on line nomenclatural information system of Eumycetozoa. Real Jardin Botanico, CSIC. Madrid, Spain. http://www.nomen.eumycetozoa.com (Date of access: 15 I 2023).

Lado C., Wrigley De Basanta D., Estrada-Torres A., Stephenson S. L., Treviño I. 2019. Diversity of Myxomycetes in arid zones of Peru part II: the cactus belt and transition zones . Anales del Jardín Botánico de Madrid 76 (2): e083. https://doi.org/10.3989/ajbm.2520

Lado C., Treviño-Zevallos I., García-Martín J. M., Wrigley de Basanta D. 2022. Diachea mitchellii: a new myxomycete species from high elevation forests in the tropical Andes of Peru. Mycologia 114: 798–811. https://doi.org/10.1080/00275514.2022.2072140

Leontyev D. V., Schnittler M., Stephenson S. L., Novozhilov Yu. K., Shchepin O. N. 2019. Towards a phylogenetic classification of the Myxomycetes. Phytotaxa 399(3): 209–238. https://doi.org/10.11646/phytotaxa.399.3.5

Link H. F. 1809. Observationes in Ordines plantarum naturales I. Anandrarum ordines Epiphytas, Mucedines, Gastromycos et Fungos. Der Gesellschaft Naturforschender Freunde zu Berlin 3: 3–42.

Lister A., Lister G. 1911. A monograph of the Mycetozoa. London: 302 p.

Liu Q. S., Yan S. Z., Chen S. L. 2015. Further resolving the phylogeny of Myxogastria (slime molds) based on COI and SSU rRNA genes. Genetika 51: 46–53. https://doi.org/10.7868/S0016675814110071

MacBride T. J. 1899. The North American slime-moulds. London: 269 p.

Martin G. W., Alexopoulos C. J. 1969. The Myxomycetes. Iowa City: 561 p.

Miller M. A., Pfeiffer W., Schwartz T. 2010. Creating the CIPRES Science Gateway for inference of large phylogenetic trees. Gateway Computing Environments Workshop (GCE): 1–8. https://doi.org/10.1109/GCE.2010.5676129

Nannenga-Bremekamp N. E. 1968. Notes on myxomycetes XVI. Remarks on some species of Diderma. Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen. Ser. C, Biological and medical sciences 71(2): 189–200.

Nannenga-Bremekamp N. E. 1989. Notes on Myxomycetes XXIII. Seven new species of Myxomycetes. Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen. Ser. C, Biological and medical sciences 92(4): 505–515.

Nannenga-Bremekamp N. E., Yamamoto Y. 1990. Additions to the Myxomycetes of Japan. Proceedings of the Koninklijke Nederlandse Akademie van Wetenschappen. Ser. C, Biological and medical sciences 93(3): 265–280.

Nguyen L. T., Schmidt H. A., von Haeseler A., Minh B. Q. 2015. IQ-TREE: a fast and effective stochastic algorithm for estimating maximum-likelihood phylogenies. Molecular Biology and Evolution 32(1): 268–274. https://doi.org/10.1093/molbev/msu300

Novozhilov Yu. K., Okun M. V., Erastova D. A., Shchepin O. N., Zemlyanskaya I. V., García-Carvajal E., Schnittler M. 2013. Description, culture and phylogenetic position of a new xerotolerant species of Physarum. Mycologia 105: 1535–1546. https://doi.org/10.3852/12-284

Novozhilov Yu. K., Mitchell D. W., Okun M. V., Shchepin O. N. 2014. New species of Diderma from Vietnam. Mycosphere 5(4): 554–564. https://doi.org/10.5943/mycosphere/5/4/8

Novozhilov Yu. K., Schnittler M., Erastova D. A., Shchepin O. N. 2017. Myxomycetes of the Sikhote Alin State Nature Biosphere Reserve (Far East, Russia). Nova Hedwigia 104(1–3): 183–209. https://doi.org/10.1127/nova_hedwigia/2016/0394

Novozhilov Yu. K., Prikhodko I. S., Shchepin O. N. 2019. A new species of Diderma from Bidoup Nui Ba National Park (southern Vietnam). Protistology 13: 126–132. https://doi.org/10.21685/1680-0826-2019-13-3-2

Okonechnikov K., Golosova O., Fursov M., UGENE team. 2012. Unipro UGENE: a unified bioinformatics toolkit. Bioinformatics 28: 1166–1167. https://doi.org/10.1093/bioinformatics/bts091

Person C. H. 1794. Dispositio methodica fungorum. Neues Magazin für die Botanik 1: 81–128.

Poulain M., Meyer M., Bozonnet J. 2011. Les Myxomycétes. Tome 1, guide de determination. Sévrier: 568 p.

Prikhodko I. S., Shchepin O. N., Bortnikova N. A., Novozhilov Yu. K.,Gmoshinskiy V. I., Moreno G., López-Villalba Á., Stephenson S. L., Schnittler M. 2023. A three-gene phylogeny supports taxonomic rearrangements in the family Didymiaceae (Myxomycetes). Mycological Progress 22: 11. https://doi.org/10.1007/s11557-022-01858-1

Rambaut A., Drummond A. J., Xie D., Baele G., Suchard M. A. 2018. Posterior summarization in Bayesian phylogenetics using Tracer 1.7. Systematic Biology 67: 901–904. https://doi.org/10.1093/sysbio/syy032

Ronikier A., Janik P., de Haan M., Kuhnt A., Zankowicz M. 2022. Importance of type specimen study for understanding genus boundaries – taxonomic clarifications in Lepidoderma based on integrative taxonomy approach leading to resurrection of the old genus Polyschismium. Mycologia 114(6): 1008–1021. https://doi.org/10.1080/00275514.2022.2109914

Vaidya G., Lohman D. J., Meier R. 2011. SequenceMatrix: concatenation software for the fast assembly of multi-gene datasets with character set and codon information. Cladistics 27: 171–180. https://doi.org/10.1111/j.1096-0031.2010.00329.x

Yamamoto Y. 1998. The myxomycete biota of Japan. Tokyo: 700 p.

Yano M., Yano K., Yamamoto Y., Orihara T. 2017. Myxomycete biota of Izu Peninsula, Central Japan. Bulletin of the Kanagawa Prefectural Museum, Natural Science 46: 25–38.



Supplementary materials

Supplementary file. List of newly obtained sequences
NSNR_2023_57(1)_Gmoshinskiy_et_al_Supplement